Professor James McDonald

• PhD: Microbial Ecology
  Department of Molecular and Clinical Pharmacology, University of Liverpool,
• BSc: Microbiology with Industrial Experience
  University of Manchester,

2024

• CyhoeddwydSoil metabolomics - current challenges and future perspectives
  Brown, R., Reay, M. K., Centler, F., Chadwick, D., Bull, I. D., McDonald, J., Evershed, R. P. & Jones, D. L., 1 Meh 2024, Yn: Soil Biology and Biochemistry. 109382.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2022

• CyhoeddwydA comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater
  Kevill, J. L., Pellett, C., Farkas, K., Brown, M. R., Bassano, I., Denise, H., McDonald, J. E., Malham, S. K., Porter, J., Warren, J., Evens, N. P., Paterson, S., Singer, A. C. & Jones, D. L., 20 Chwef 2022, Yn: Science of the Total Environment. 808, 151916.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydRNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels
  Hillary, L. S., Adriaenssens, E. M., Jones, D. L. & McDonald, J. E., 8 Ebr 2022, Yn: ISME Communications. 2, 1, t. 34 34.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydUsing a systematic approach to synthesize existing knowledge on Gymnopus fusipes ( syn . Collybia fusipes ), the cause of Collybia root rot
  Pettifor, B., McDonald, J. & Denman, S., Hyd 2022, Yn: Forest Pathology. 52, 5, t. 1 - 14 e12766.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid

2021

• CyhoeddwydBacterial biota of forest trees
  Pettifor, B. & McDonald, J., Awst 2021, Forest Microbiology: Tree Microbiome: Phyllosphere, Endosphere and Rhizosphere. Asiegbu, F. O. & Kovalchuk, A. (gol.). 1 gol. Academic Press, Elsevier, Cyfrol 1. t. 161 - 173 12 t.
  Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Pennod › adolygiad gan gymheiriaid
• CyhoeddwydConcentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR.(vol 4, 17, 2021)
  Farkas, K., Hillary, L. S., Thorpe, J., Walker, D. I., Lowther, J. A., McDonald, J. E., Malham, S. K. & Jones, D. L., 12 Tach 2021, Yn: Methods and Protocols. 4, 4
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydConcentration and quantification of SARS-CoV-2 RNA in wastewater using polyethylene glycol-based concentration and qRT-PCR
  Farkas, K., Hillary, L., Thorpe, J., Walker, D., Lowther, J. A., McDonald, J., Malham, S. & Jones, D. L., 23 Chwef 2021, Yn: Methods and Protocols. 4, 1, 10 t., 17.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydE. coli Is a Poor End-Product Criterion for Assessing the General Microbial Risk Posed From Consuming Norovirus Contaminated Shellfish
  Sharp, J. H., Clements, K., Diggens, M., McDonald, J. E., Malham, S. K. & Jones, D. L., 19 Chwef 2021, Yn: Frontiers in Microbiology. 12, t. 608888
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydImproving quantification of bivalve larvae in mixed plankton samples using qPCR: A case study on Mytilus edulis
  Alexander, J., Malham, S., Smyth, D., Webb, J., Fidler, D., Bayford, P., McDonald, J. & Le Vay, L., 15 Chwef 2021, Yn: Aquaculture. 532, 736003.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydMonitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK
  Hillary, L. S., Farkas, K., Maher, K. H., Lucaci, A., Thorpe, J., Distaso, M. A., Gaze, W. H., Paterson, S., Burke, T., Connor, T. R., McDonald, J. E., Malham, S. K. & Jones, D. L., 15 Gorff 2021, Yn: Water Research. 200, t. 117214 1 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydShifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation
  George, P. B. L., Fidler, D. B., Van Nostrand, J. D., Atkinson, J. A., Mooney, S. J., Creer, S., Griffiths, R. I., McDonald, J. E., Robinson, D. A. & Jones, D. L., 14 Medi 2021, Yn: Frontiers in Microbiology. 12, 735022.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydTracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity
  Adriaenssens, E. M., Farkas, K., McDonald, J. E., Jones, D. L., Allison, H. E. & McCarthy, A. J., 15 Medi 2021, Yn: Water Research. 203
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2020

• CyhoeddwydA multiplex real‐time PCR assay enables simultaneous rapid detection and quantification of bacteria associated with acute oak decline
  Crampton, B. G., Plummer, S., Kaczmarek, M., McDonald, J. & Denman, S., Medi 2020, Yn: Plant Pathology. 69, 7, t. 1301-1310 10 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydApplication of ecological and evolutionary theory to microbiome community dynamics across systems
  McDonald, J., Marchesi, J. R. & Koskella, B., 23 Rhag 2020, Yn: Proceedings of the Royal Society B: Biological Sciences. 287, 1941, 20202886.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydHost–microbiota–insect interactions drive emergent virulence in a complex tree disease
  Doonan, J., Broberg, M., Denman, S. & McDonald, J., 26 Awst 2020, Yn: Proceedings of the Royal Society B: Biological Sciences. 287, 1933, 20200956.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydImpact of Sediment Concentration on the Survival of Wastewater-Derived blaCTX-M-15-Producing E. coli, and the Implications for Dispersal into Estuarine Waters
  Bashawri, Y. M. A., Robins, P., Jones, D. L., McDonald, J., Cooper, D. & Williams, P., 19 Hyd 2020, Yn: International Journal of Environmental Research and Public Health. 17, 20, 15 t., 7608.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydShedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19
  Jones, D. L., Baluja, M. Q., Graham, D. W., Corbishley, A., McDonald, J. E., Malham, S. K., Hillary, L. S., Connor, T. R., Gaze, W. H., Moura, I. B., Wilcox, M. H. & Farkas, K., 20 Rhag 2020, Yn: Science of the Total Environment. 749, 141364.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid
• CyhoeddwydSurvival of Brenneria goodwinii and Gibbsiella quercinecans, Associated with Acute Oak Decline, in Rainwater and Forest Soil
  Pettifor, B. J., Doonan, J., Denman, S. & McDonald, J., Maw 2020, Yn: Systematic and Applied Microbiology. 43, 2
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydViral indicators for tracking domestic wastewater contamination in the aquatic environment
  Farkas, K., Walker, D., Adriaenssens, E., McDonald, J., Hillary, L., Malham, S. & Jones, D. L., 15 Awst 2020, Yn: Water Research. 181, 115926.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydWastewater and public health: the potential of wastewater surveillance for monitoring COVID-19
  Farkas, K., Hillary, L., Malham, S., McDonald, J. & Jones, D. L., Hyd 2020, Yn: Current Opinion in Environmental Science & Health. 17, t. 14-20 7 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2019

• CyhoeddwydCritical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment
  Farkas, K., Adriaenssens, E. M., Walker, D. I., McDonald, J., Malham, S. & Jones, D. L., 1 Meh 2019, Yn: Food and Environmental Virology. 11, 2, t. 113-119
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydExtraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue
  Broberg, M. & McDonald, J., 5 Chwef 2019, Yn: Methods and Protocols. 2, 1, 15.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydGenomic analysis of bacteria in the Acute Oak Decline pathobiome
  Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Ion 2019, Yn: Microbial Genomics. 5, 1, 15 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2018

• CyhoeddwydIntegrated multi-omic analysis of host-microbiota interactions in acute oak decline
  Broberg, M., Doonan, J., Mundt, F. & McDonald, J., 30 Ion 2018, Yn: Microbiome. 6, 21.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydMicrobiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline
  Denman, S., Doonan, J., Ransom-Jones, E., Broberg, M., Plummer, S., Kirk, S. A., Scarlett, K., Griffiths, A., Kaczmarek, M., Foster, J., Peace, A., Golyshin, P., Hassard, F., Brown, N., Kenny, J. G. & McDonald, J., 2018, Yn: The ISME Journal. 12, t. 386-399
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydSeasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses
  Farkas, K., Marshall, M., Cooper, D., McDonald, J. E., Malham, S. K., Peters, D. E., Maloney, J. D. & Jones, D. L., Tach 2018, Yn: Environmental Science and Pollution Research. 25, 33, t. 33391-33401
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydSeasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters
  Malham, S., Farkas, K., McDonald, J., Jones, D. L., Cooper, D. & de Rougemont, A., 1 Medi 2018, Yn: Science of the Total Environment. 634, t. 1174 1183 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydTwo-Step Concentration of Complex Water Samples for the Detection of Viruses
  Farkas, K., McDonald, J., Malham, S. & Jones, D. L., 10 Medi 2018, Yn: Methods and Protocols. 1, 3, 35.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2017

• CyhoeddwydA communal catalogue reveals Earth's multiscale microbial diversity
  Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., Navas-Molina, J. A., Janssen, S., Kopylova, E., Vazquez-Baeza, Y., Gonzalez, A., Morton, J. T., Mirarab, S., Xu, Z. Z., Jiang, L., Haroon, M. F., Kanbar, J., Zhu, Q., Song, S. J., Kosciolek, T., Bokulich, N. A., Lefler, J., Brislawn, C. J., Humphrey, G., Owens, S. M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J. A., Clauset, A., Stevens, R. L., Shade, A., Pollard, K. S., Goodwin, K. D., Jansson, J. K., Gilbert, J. A., Knight, R., Agosto Rivera, J. L., Al-Moosawi, L., Alverdy, J., Amato, K. R., Andras, J., Angenent, L. T., Antonopoulos, D. A., Apprill, A., Armitage, D., Ballantine, K., Bárta, J., Baum, J. K., Berry, A., Bhatnagar, A., Bhatnagar, M., Biddle, J. F., Bittner, L., Boldgiv, B., Bottos, E., Boyer, D. M., Braun, J., Brazelton, W., Brearley, F. Q., Campbell, A. H., Caporaso, J. G., Cardona, C., Carroll, J., Cary, S. C., Casper, B. B., Charles, T. C., Chu, H., Claar, D. C., Clark, R. G., Clayton, J. B., Clemente, J. C., Cochran, A., Coleman, M. L., Collins, G., Colwel, R. R., Contreras, M., Crary, B. B., Creer, S., Cristol, D. A., Crump, B. C., Cui, D., Daly, S. E., Davalos, L., Dawson, R. D., Defazio, J., Delsuc, F., Dionisi, H. M., Dominguez-Bello, M. G., Dowell, R., Dubinsky, E. A., Dunn, P. O., Ercolini, D., Espinoza, R. E., Ezenwa, V., Fenner, N., Findlay, H. S., Fleming, I. D., Fogliano, V., Forsman, A., Freeman, C., Friedman, E. S., Galindo, G., Garcia, L., Garcia-Amado, M. A., Garshelis, D., Gasser, R. B., Gerdts, G., Gibson, M. K., Gifford, I., Gill, R. T., Giray, T., Gittel, A., Golyshin, P., Gong, D., Grossart, H.-P., Guyton, K., Haig, S.-J., Hale, V., Hall, R. S., Hallam, S. J., Handley, K. M., Hasan, N. A., Haydon, S. R., Hickman, J. E., Hidalgo, G., Hofmockel, K. S., Hooker, J., Hulth, S., Hultman, J., Hyde, E., Ibáñez-Álamo, J. D., Jastrow, J. D., Jex, A. R., Johnson, L. S., Johnston, E. R., Joseph, S., Jurburg, S. D., Jurelevicius, D., Karlsson, A., Karlsson, R., Kauppinen, S., Kellogg, C. T. E., Kennedy, S. J., Kerkhof, L. J., King, G. M., Kling, G. W., Koehler, A. V., Krezalek, M., Kueneman, J., Lamendella, R., Landon, E. M., Lane-deGraaf, K., LaRoche, J., Larsen, P., Laverock, B., Lax, S., Lentino, M., Levin, I. I., Liancourt, P., Liang, W., Linz, A. M., Lipson, D. A., Liu, Y., Lladser, M. E., Lozada, M., Spirito, C. M., MacCormack, W. P., MacRae-Crerar, A., Magris, M., Martín-Platero, A. M., Martín-Vivaldi, M., Martínez, L. M., Martínez-Bueno, M., Marzinelli, E. M., Mason, O. U., Mayer, G. D., McDevitt-Irwin, J. M., McDonald, J., McGuire, K. L., McMahon, K. D., McMinds, R., Medina, M., Mendelson, J. R., Metcalf, J. L., Meyer, F., Michelangeli, F., Miller, K., Mills, D. A., Minich, J., Mocali, S., Moitinho-Silva, L., Moore, A., Morgan-Kiss, R. M., Munroe, P., Myrold, D., Neufeld, J. D., Ni, Y., Nicol, G. W., Nielsen, S., Nissimov, J. I., Niu, K., Nolan, M. J., Noyce, K., O’Brien, S. L., Okamoto, N., Orlando, L., Ortiz Castellano, Y., Osuolale, O., Oswald, W., Parnell, J., Peralta-Sánchez, J. M., Petraitis, P., Pfister, C., Pilon-Smits, E., Piombino, P., Pointing, S. B., Pollock, F. J., Potter, C., Prithiviraj, B., Quince, C., Rani, A., Ranjan, R., Rao, S., Rees, A. P., Richardson, M., Riebesell, U., Robinson, C., Rockne, K. J., Rodriguezl, S. M., Rohwer, F., Roundstone, W., Safran, R. J., Sangwan, N., Sanz, V., Schrenk, M., Schrenzel, M. D., Scott, N. M., Seger, R. L., Seguin-Orlando, A., Seldin, L., Seyler, L. M., Shakhsheer, B., Sheets, G. M., Shen, C., Shi, Y., Shin, H., Shogan, B. D., Shutler, D., Siegel, J., Simmons, S., Sjöling, S., Smith, D. P., Soler, J. J., Sperling, M., Steinberg, P. D., Stephens, B., Stevens, M. A., Taghavi, S., Tai, V., Tait, K., Tan, C. L., Tas, N., Taylor, D. L., Thomas, T., Timling, I., Turner, B. L., Urich, T., Ursell, L. K., van der Lelie, D., Van Treuren, W., van Zwieten, L., Vargas-Robles, D., Vega Thurber, R., Vitaglione, P., Walker, D. A., Walters, W. A., Wang, S., Wang, T., Weave, T., Webster, N. S., Wehrle, B., Weisenhorn, P., Weiss, S., Werner, J. J., West, K., Whitehead, A., Whitehead, S. R., Whittingham, L. A., Willerslev, E., Williams, A. E., Wood, S. A., Woodhams, D. C., Yang, Y., Zaneveld, J., Zarraonaindia, I., Zhang, Q. & Zhao, H., 23 Tach 2017, Yn: Nature. 551, 7681, t. 457-+
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydCritical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective
  Hassard, F., Sharp, J., Taft, H., Le Vay, L., Harris, J., McDonald, J., Tuson, K., Wilson, J., Jones, D. & Malham, S., Meh 2017, Yn: Food and Environmental Virology. 9, 2, t. 123-141
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydEvaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment
  Farkas, K., Hassard, F., McDonald, J., Malham, S. & Jones, D., 24 Ion 2017, Yn: Frontiers in Microbiology. 6, t. 1-12 53.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydEvaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples
  Farkas, K., Peters, D. E., McDonald, J., de Rougemont, A., Malham, S. & Jones, D., Medi 2017, Yn: Food and Environmental Virology. 9, 3, t. 342-349
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydFifty important research questions in microbial ecology
  Antwis, R. E., Griffiths, S. M., Harrison, X. A., Aranega-Bou, P., Arce, A., Bettridge, A. S., Brailsford, F., de Menezes, A., Devaynes, A., Forbes, K. M., Fry, E. L., Goodhead, I., Haskell, E., Heys, C., James, C., Johnston, S. R., Lewis, G. R., Lewis, Z., Macey, M. C., McCarthy, A., McDonald, J., Mejia-Florez, N. L., O'Brien, D., Orland, C., Pautasso, M., Reid, W. D. K., Robinson, H. A., Wilson, K. & Sutherland, W. J., Mai 2017, Yn: Fems Microbiology Ecology. 93, 5, fix044.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydIdentification of Armillaria species on declined oak in Britain: implications for oak health
  Denman, S., Barrett, G., Kirk, S. A., McDonald, J. & Coetzee, M. P. A., 7 Ion 2017, Yn: Forestry. 90, 1, t. 148-161
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydLignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass- Degrading Diversity Emma
  Ransom-Jones, E., McCarthy, A., Haldenby, S., Doonan, J. & McDonald, J., Awst 2017, Yn: mSphere. 2, 4, e00300.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydMultilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline
  Kaczmarek, M., Mullett, M. S., McDonald, J. & Denman, S., 1 Meh 2017, Yn: PLoS ONE. 12, 6, e0178390.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydPhysicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment
  Hassard, F., Andrews, A., Jones, D. L., Parsons, L., Jones, V., Cox, B. A., Daldorph, P., Brett, H., McDonald, J. & Malham, S., Hyd 2017, Yn: Frontiers in Microbiology. 8, 1996.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydSubtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems
  Potter, C., Freeman, C., Golyshin, P., Ackerman, G., Fenner, N., McDonald, J., Ehbair, A., Jones, T., Murphy, L. & Creer, S., Medi 2017, Yn: Scientific Reports. 7, 11314.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydTaxonomy and identification of bacteria associated with acute oak decline
  Brady, C., Arnold, D., McDonald, J. & Denman, S., Gorff 2017, Yn: World Journal of Microbiology and Biotechnology. 33, 7, t. 143
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid

2016

• CyhoeddwydAbundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments—a Review
  Hassard, F., Gwyther, C. L., Farkas, K., Andrews, A., Jones, V., Cox, B., Brett, H., Jones, D., McDonald, J. & Malham, S., 1 Tach 2016, Yn: Frontiers in Microbiology.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydCharacterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules
  McDonald, J., Larsen, N., Pennington, A., Connolly, J., Wallis, C., Rooks, D. J., Hall, N., McCarthy, A. J. & Allison, H. E., 8 Meh 2016, Yn: PLoS ONE. 11, 6, e0157046.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydDecay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations
  Perkins, T. L., Perrow, K. A., Rajko-Nenow, P., Jago, C. F., Jones, D. L., Malham, S. K. & McDonald, J. E., 1 Rhag 2016, Yn: Science of the Total Environment. 572, t. 1645-1652
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydDraft Genome Sequence of Clostridium sp. strain W14A isolated from a cellulose-degrading biofilm in a landfill leachate microcosm
  Ransom-Jones, E. & McDonald, J., 22 Medi 2016, Yn: Genome Announcements. 4, 5, e0098516.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydIsolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline
  Denman, S., Plummer, S., Peace, A. & McDonald, J., 1 Hyd 2016, Yn: Systematic and Applied Microbiology. 39, 7, t. 484-490
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydShotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities
  Doonan, J., Denman, S., McDonald, J. & Golyshin, P., 30 Tach 2016, Metagenomics. Streit , W. R. & Daniel, R. (gol.). Springer New York, Cyfrol 1539. t. 85-97 (Methods in Molecular Biology; Cyfrol 1539).
  Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Pennod
• CyhoeddwydSpatial patterns and environmental constraints on ecosystem services at a catchment scale
  Emmett, B., Cooper, D., Smart, S., Jackson, B., Thomas, A., Cosby, B., Evans, C., Glanville, H., McDonald, J., Malham, S., Marshall, M., Jarvis, S., Rajko-Nenow, P., Webb, G. P., Ward, S., Rowe, E., Jones, L., Vanbergen, E. J., Keith, A., Carter, H., Pereira, M. G., Hughes, S., Lebron, I., Wade, A. & Jones, D., 1 Rhag 2016, Yn: Science of the Total Environment. 572, t. 1586-1600
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydUse of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges
  Winterbourn, J., Clements, K., Lowther, J. A., Malham, S., McDonald, J. & Jones, D., 15 Tach 2016, Yn: Water Research. 105, November, t. 241-250
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2015

• CyhoeddwydImpact of climate change on UK estuaries: A review of past trends and potential projections
  Robins, P. E., Skov, M. W., Lewis, M. J., Gimenez, L., Davies, A. G., Malham, S. K., Neill, S. P., McDonald, J. E., Whitton, T. A., Jackson, S. E. & Jago, C. F., 17 Rhag 2015, Yn: Estuarine, Coastal and Shelf Science. 169, t. 119-135
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydThe intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline
  Doonan, J., Denman, S., Gertler, C., Pachebat, J. A., Golyshin, P. N. & McDonald, J. E., 1 Ion 2015, Yn: Journal of Applied Microbiology. 118, 1, t. 193-201 9 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydUsing chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site
  Rhymes, J. M., Rhymes, J., Jones, L., Lapworth, D. J., White, D., Fenner, N., McDonald, J. E. & Perkins, T. L., 20 Ion 2015, Yn: Science of the Total Environment. 511, t. 703-710
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2014

• CyhoeddwydDeveloping Skills in Second Year Biological Science Undergraduates
  Robinson, R. L. & McDonald, J. E., 1 Gorff 2014, Yn: Bioscience Education. 22, 1, t. 42-53
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydDistribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs
  Ransom-Jones, E., Jones, D. L., Edwards, A. & McDonald, J. E., 17 Gorff 2014, Yn: Systematic and Applied Microbiology. 37, 7, t. 502-509
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydEnhancing first year undergraduate student engagement via the School of Biological Sciences tutorials module
  McDonald, J. E. & Robinson, R. L., 1 Gorff 2014, Yn: Bioscience Education. 22, 1, t. 54-69
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydSediment Composition Influences Spatial Variation in the Abundance of Human Pathogen Indicator Bacteria within an Estuarine Environment
  Perkins, T. L., Clements, K., Baas, J. H., Jago, C. F., Jones, D. L., Malham, S. K. & McDonald, J. E., 14 Tach 2014, Yn: PLoS ONE. 9, 11
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydThe interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters
  Malham, S. K., Rajko-Nenow, P., Howlett, E., Tuson, K. E., Perkins, T. L., Pallett, D. W., Wang, H., Jago, C. F., Jones, D. L. & McDonald, J. E., 7 Gorff 2014, Yn: Environmental Science: Processes and Impacts. 16, t. 2145-2155
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2013

• CyhoeddwydBioreduction of Sheep Carcasses Effectively Contains and Reduces Pathogen Levels under Operational and Simulated Breakdown Conditions
  Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J. E. & Williams, A. P., 21 Mai 2013, Yn: Environmental Science and Technology. 47, 10, t. 5267–5275
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydEvaluation of spatial contamination patterns for norovirus and faecal indicator bacteria near to a coastal sewage discharge using Mytilus edulis as biosentinels
  Winterbourn, J. B., Clements, K., Malham, S., McDonald, J. & Jones, D. L., Ion 2013, 92 McLeod et al (eds.). Proc. 9th Int. Conf. Molluscan Shellfish Safety . t. 89-92
  Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion Cynhadledd › Cyfraniad i Gynhadledd

2012

• CyhoeddwydImportance of Micromonospora spp. as colonizers of cellulose in freshwater lakes as demonstrated by quantitative reverse transcriptase PCR of 16S rRNA
  de Menezes, A. B., McDonald, J. E., Allison, H. E. & McCarthy, A. J., Mai 2012, Yn: Applied and Environmental Microbiology. 78, 9, t. 3495-9 5 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydMetagenomic approaches to the discovery of cellulases
  Rooks, D. J., McDonald, J. E. & McCarthy, A. J., 2012, Yn: Methods in Enzymology. 510, t. 375-94 20 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydMethods for the isolation of cellulose-degrading microorganisms
  McDonald, J. E., Rooks, D. J. & McCarthy, A. J., 2012, Yn: Methods in Enzymology. 510, t. 349-74 26 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydThe Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria
  Ransom-Jones, E., Jones, D., McCarthy, A. J. & McDonald, J. E., Chwef 2012, Yn: Microbial Ecology. 63, 2, t. 267-281
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydThe microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters
  McDonald, J. E., Houghton, J. N., Rooks, D. J., Allison, H. E. & McCarthy, A. J., 1 Ebr 2012, Yn: Environmental Microbiology. 14, 4, t. 1077-1087
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2010

• Cyhoeddwyd454-pyrosequencing: a molecular battiscope for freshwater viral ecology
  Rooks, D. J., Smith, D. L., McDonald, J. E., Woodward, M. J., McCarthy, A. J. & Allison, H. E., 21 Gorff 2010, Yn: Genes. 1, 2, t. 210-26 17 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydComposition of the landfill microbial community as determined by application of domian- and group-specific 16s and 18s rRNA-targeted oligonucleotide probes.
  McDonald, J. E., Allison, H. E. & McCarthy, A. J., 1 Chwef 2010, Yn: Applied and Environmental Microbiology. 76, 4, t. 1301-1306
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydDevelopment and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages.
  Rooks, D. J., Yan, Y., McDonald, J. E., Woodward, M. J., McCarthy, A. J. & Allison, H. E., 1 Mai 2010, Yn: Environmental Microbiology. 12, 5, t. 1194-1204
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydHigh-Throughput Method for Rapid Induction of Prophages from Lysogens and Its Application in the Study of Shiga Toxin-Encoding Escherichia coli Strains
  McDonald, J. E., Smith, D. L., Fogg, P. C., McCarthy, A. J. & Allison, H. E., 1 Ebr 2010, Yn: Applied and Environmental Microbiology. 76, 7, t. 2360-2365
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid
• CyhoeddwydIdentification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes
  Edwards, J. L., Smith, D. L., Connolly, J., McDonald, J. E., Cox, M. J., Joint, I., Edwards, C. & McCarthy, A. J., 26 Hyd 2010, Yn: Genes. 1, 3, t. 371-84 14 t.
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2009

• CyhoeddwydMolecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes.
  McDonald, J. E., De Menezes, A. B., Allison, H. E. & McCarthy, A. J., 1 Awst 2009, Yn: Applied and Environmental Microbiology. 75, 15, t. 5148-5152
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2008

• CyhoeddwydDetection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.
  McDonald, J. E., Lockhart, R. J., Cox, M. J., Allison, H. E. & McCarthy, A. J., 1 Mai 2008, Yn: Environmental Microbiology. 10, 5, t. 2360-2365
  Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

2022

• BU-IIA Funded Project: Exploring technology transfer options for microbial bioaugmentation of anaerobic waste biomass conversion to biogas

  The overarching aim of this application is to build on our current work on the EU SYNBIOGAS project which is developing engineered microbial communities to enhance waste biomass conversion to biomass. This proposal, which will fund additional plant-scale bioaugmentation of anaerobic digestion processes and techno-economic assessment of the bioprocess, enables us to increase our research activity at TRL6 and build a roadmap for technology adoption by our industrial partners. The project will facilitate applications for follow-on-funding, generate REF-relevant impact and provide possibilities for commercialisation. The project aligns directly with the University’s Strategy 2030 and the RWIF strategic priorities. 

  Funding awarded through the Bangor University Innovation and Impact Award (Research Wales Innovation Funding). Value = £42,055

  1 Ebr 2022 – 31 Maw 2023

  Gweithgaredd: Arall (Cyfrannwr)

• HEFCW HEIR bridging funding for R44R06 / F008297 (BB/T011076/1)

  01/05/2021 – 31/08/2021 (Wedi gorffen)

• HEFCW HEIR bridging funding for R44R13/ F008616 (BB/T01069X/1)

  01/05/2021 – 01/08/2022 (Wedi gorffen)

• BACSTOP

  01/09/2020 – 28/08/2024 (Wedi gorffen)

• FUTURE OAK: Engineering the oak microbiome to future-proof an arboreal icon

  01/09/2020 – 06/12/2024 (Wedi gorffen)

• KESS II Phd with Woodland Heritage BUK2213

  01/08/2020 – 15/02/2024 (Wedi gorffen)

• SYNBIOGAS

  01/01/2020 – 10/07/2024 (Wedi gorffen)

• Collibya and oak decline

  01/01/2019 – 27/07/2023 (Wedi gorffen)

• Oak Declines PDRA - Kajamuhan

  01/03/2018 – 30/06/2021 (Wedi gorffen)

• Fungal genomics PDRA

  01/11/2017 – 01/08/2022 (Wedi gorffen)

• Mortality of UK plantation oak

  01/10/2017 – 01/08/2022 (Wedi gorffen)

• Gene expression analysis of microorganisms in Acute Oak Decline

  01/05/2016 – 01/08/2019 (Wedi gorffen)

• Andrew Griffiths AOD RO post

  01/03/2016 – 31/10/2017 (Wedi gorffen)

• Identification, ecology and function of Armillaria species associated with oak

  01/10/2015 – 01/08/2019 (Wedi gorffen)

• A systems approach to understanding microorganisms in Acute Oak Decline

  01/05/2015 – 15/07/2017 (Wedi gorffen)

• Characterisation of the Fibrobacteres phylum

  01/07/2014 – 28/02/2021 (Wedi gorffen)

• Identification, Ecology and Function of Armillaria species (PDRA)

  01/01/2014 – 31/05/2017 (Wedi gorffen)

• DEFRA-Plant Health

  01/01/2013 – 31/07/2016 (Wedi gorffen)

• Genomic analysis of bacterial species associated with Acute Oak Decline

  01/10/2012 – 31/08/2016 (Wedi gorffen)

• The microbial decomposition of cellulose in the environment

  01/10/2011 – 30/09/2012 (Wedi gorffen)

• Anaerobic fungi: life beyond the herbivore gut?

  01/06/2011 – 31/08/2011 (Wedi gorffen)

• Pathogen survival in flocs

  01/06/2011 – 31/08/2011 (Wedi gorffen)

• Systematics of Anaerobic fungi (Neocallimastigales)

  01/06/2011 – 27/02/2012 (Wedi gorffen)

• Determination of the phenotypic taxonomy of the bacterial phylum Fibrobacteres

  01/09/2010 – 30/06/2013 (Wedi gorffen)